Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets.
Nucleic Acids Res. 2012 Jul; 40(Web Server issue):W510-5
Zambelli F, Prazzoli GM, Pesole G, Pavesi G. Nucleic Acids Res. 2012 Jul; 40(Web Server issue):W510-5
This paper presents a methodology and software implementation that allows users to discover a set of transcription factors or epigenetic modifications that regulate a set of genes of interest. A wealth of data about transcription factor binding exists in the public domain, and this is a good example of a group utilizing those resources...
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