Gene network inference and visualization tools for biologists: application to new human transcriptome datasets.
Nucleic Acids Res. 2012 Mar 1; 40(6):2377-2398
Hurley D, Araki H, Tamada Y, Dunmore B, ..., Miyano S, Charnock-Jones DS, Crampin EJ, Print CG. Hurley D, Araki H, Tamada Y, Dunmore B, Sanders D, Humphreys S, Affara M, Imoto S, Yasuda K, Tomiyasu Y, Tashiro K, Savoie C, Cho V, Smith S, Kuhara S, Miyano S, Charnock-Jones DS, Crampin EJ, Print CG. Nucleic Acids Res. 2012 Mar 1; 40(6):2377-2398
Gene regulatory network (GRN) inference is an underutilised approach to analysis of transcriptome data. The authors argue that this is due, in significant part, to three factors: requirements regarding the data, complexity of algorithms and software, and lack of consensus on criteria for comparing performance. Addressing all three...
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