A simple, fast, and accurate method of phylogenomic inference.
Genome Biol. 2008; 9(10):R151
Wu M, Eisen JA. Genome Biol. 2008; 9(10):R151
The authors present a new tool, automated phylogenomic inference (AMPHORA), for the phylogenetic assignment of genomic and metagenomic sequence data, which uses hidden Markov model (HMM)-based protein alignments of housekeeping genes.
Metagenomic sequencing projects can allow for unprecedented insights into the functional diversity...
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