Genomics | Developmental Evolution | Bioinformatics | Evolutionary/Comparative Genetics | Evolutionary Ecology
The effect of the distribution of distances between trees on detection of phylogenetic recombination
Leonardo de Oliveira Martins*, Hirohisa Kishino
*Corresponding author: Leonardo de Oliveira Martins
Bioinformatics and Molecular Evolution Lab, University of Vigo, , Spain
F1000Posters 2010, 1: 194 (poster) [ENGLISH]
Poster [1.40 MB] | Resulting articles
Presented at
Society for Molecular Biology and Evolution 2010 meeting,
4 - 8 Jul 2010, P-S09-07
This poster describes the software biomc2, which detects phylogenetic recombination using a prior distribution of distances between topologies of consecutive alignment segments.
We present its usage on an HIV genomic dataset and on simulated alignments, where we show the importance of our chosen probability for the distances, which resemble the minimum number of recombinations.
No relevant conflicts of inter
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This poster is open access subject to the CC BY-NC Creative Commons 3.0 License
