Genomics | Bioinformatics
GenomeRNAi: a phenotype database for large-scale RNAi screens
Esther E Schmidt*, Oliver Pelz, Svetlana Buhlmann, Arunraj Dhamodaran, Klaus Yserentant, Grainne Kerr, Maximilian Koch, Andreas Kling, Michael Boutros
*Corresponding author: Esther E Schmidt
Signaling and Functional Genomics, German Cancer Research Center, Heidelberg, Germany
F1000Posters 2012, 3: 978 (poster) [English]
Poster [3.85 MB]
Presented at
International Conference on Intelligent Systems for Molecular Biology (ISMB) 2012,
14 - 16 Jul 2012, E02
The GenomeRNAi database aims to represent a comprehensive repository for RNAi screening data from human and Drosophila. The data is manually curated from the literature and is presented on a website well interlinked with other publically available resources. RNAi reagent information and quality assessment are also provided.
The database contains 127 screens for human, and 164 screens for Drosophila and can be searched by gene, reagent or phenotype; download options are available. A DAS server has been implemented for phenotype and RNAi reagent data.
Implementation of a screen comparison tool.
No relevant competing interests disclosed.
FP7, HEALTH-F2-2008-201666
Helmholtz , Alliance
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